PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002485.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 669aa    MW: 76225.2 Da    PI: 8.7549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002485.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016183205123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y C +C   F+ +  + rH r H
  Itr_sc002485.1_g00010.1 183 YYCDICRIGFNERTKFARHRRFH 205
                              89*******************99 PP

2zf-C2H210.70.0017360382123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y C +C   F+ + ++ +H r H
  Itr_sc002485.1_g00010.1 360 YYCDICRIGFTEPPEFAQHRRFH 382
                              89*******************99 PP

3zf-C2H215.93.7e-05573595123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+k+F r  +++ H r H
  Itr_sc002485.1_g00010.1 573 YRCQFCPKVFDRLTSFTGHVRIH 595
                              9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.69E-7182252No hitNo description
SMARTSM003550.43183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SMARTSM003550.37230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642230257IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SMARTSM003550.35360382IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91360387IPR007087Zinc finger, C2H2
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
SMARTSM003550.37407429IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642407434IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-8407429No hitNo description
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-8568595No hitNo description
SMARTSM003550.0019573595IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388573600IPR007087Zinc finger, C2H2
PROSITE patternPS000280575595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MISYLDNYYL QQNQQRAELE LKMVAEDGVP IDFMALERGG DDAFTEELNR RTAGMESRDQ  60
LFRFIEGLGG EWLNRKRMCV DAGEFIDVLP AGWKVTVAIK PSRQGRSVPY FYNTSPNPSI  120
QFYSQKSIRQ NVAVLPREDG GDGNDGVNST AIVTYIAPEM HGEEILLEGT DNPAGGVQIH  180
DRYYCDICRI GFNERTKFAR HRRFHKKTRS GGYRNRPPLT DGMIMKDGKY GCQFCPKVFD  240
RLTSYTGHVG IHLRRNLKWS STSIEAAPRA AHTYYGKDPR GARVRLRPRA YSRVGNLRLL  300
SEILMRDEEE DLANLRLLSE VSERCIWAIV TYIAPEMHGE EILQEGTDNL AGGVQIHGRY  360
YCDICRIGFT EPPEFAQHRR FHRKTRSGGY RNRPPLTDGM IMKDGKYGCQ FCPKVFDRLT  420
SYTGHVGIHL RRNLKSIEAA PKAANTYYRK HILGFKLENE NEAAIFNFDP SDEQFPSCKE  480
VARFLQPQFL SRPTAQNVAV LPRGDDGDGD GDGNDGVNST AIVTYIAPEM HGEEILPEGI  540
DNPAGGVSQE NSFRRYRNRP PLTDGMIMKD GKYRCQFCPK VFDRLTSFTG HVRIHLRRNL  600
KCSSTSIEAA PRAAHTYYGK DPRGARVRLR PRAYSRVDNL RLLSEISIRD KEEEFANLRF  660
LSEVSERLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199208RHRRFHKKTR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619